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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23021496_23022898_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23021496 - 23022898
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CATTTTTCAAAT
Flanking Amino Acid:
LQTGKEYAVKIIEKNAGHSR
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84
0.76
0.7
79.5
26.1
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
54.1
0.21
1.6
70.07
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024709
23010781 - 23032545
21765
ENSAPLT00000008839
23010781 - 23031223
20443
ENSAPLT00000032550
23018199 - 23031223
13025