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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23040387_23042701_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23040387 - 23042701
Intron Length:
2315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
TTTCTTCCAACG
Flanking Amino Acid:
LVDHRELEPLKEMTERICH*
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
71.9
0.49
0.9
66.8
33
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
48.1
-0.2
1.9
61.49
40.4

Associated Gene:

Gene:
MOB3C
Ensembl Gene ID:
ENSAPLG00000009181
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009558
23039845 - 23053963
14119