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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23042905_23048195_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23042905 - 23048195
Intron Length:
5291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGGTTTCCAACG
Flanking Amino Acid:
NNEDIFPTRIGVPFPKQFQQ
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
46
-0.4
1.9
52.51
42.3

Associated Gene:

Gene:
MOB3C
Ensembl Gene ID:
ENSAPLG00000009181
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009558
23039845 - 23053963
14119