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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23048681_23053662_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
23048681 - 23053662
Intron Length:
4982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
CTGTGCATAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
81
0.7
0.7
73
31.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
52.5
0.06
2.1
66.91
44.7

Associated Gene:

Gene:
MOB3C
Ensembl Gene ID:
ENSAPLG00000009181
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009558
23039845 - 23053963
14119