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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23059828_23060377_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23059828 - 23060377
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTGTTTACTT
Flanking Amino Acid:
LHFTSLINVQTQGESAPSQL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.9
0.76
0.8
81.7
30
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
55.6
0.25
2
77.48
40

Associated Gene:

Gene:
ATPAF1
Ensembl Gene ID:
ENSAPLG00000009308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009700
23058277 - 23067870
9594