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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23060474_23062099_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23060474 - 23062099
Intron Length:
1626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
CACTTCTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTATGAAAA
Flanking Amino Acid:
MWKRAQKCPSFLYALPRKEG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
73.2
43.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.8
73.1
31.4
Minor 5ss
38.8
-1.3
3
51.5
45.1
Minor BPS
52.7
0.08
1.8
69.33
35.9

Associated Gene:

Gene:
ATPAF1
Ensembl Gene ID:
ENSAPLG00000009308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009700
23058277 - 23067870
9594