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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23065373_23066044_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23065373 - 23066044
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GATTCCTTATGC
Flanking Amino Acid:
MSKGGFTRDKTLDSILNVEM
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
58.2
0.24
1.9
68.45
42.7

Associated Gene:

Gene:
ATPAF1
Ensembl Gene ID:
ENSAPLG00000009308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009700
23058277 - 23067870
9594