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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23066096_23066687_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23066096 - 23066687
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGAAAATTAAAG
Flanking Amino Acid:
AEFVRCMEEKAEGLGTKMSK
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
75.3
34
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
20.7
-3.4
3.8
30.5
42.8
Minor BPS
45.1
-0.5
1.9
50.29
42.3

Associated Gene:

Gene:
ATPAF1
Ensembl Gene ID:
ENSAPLG00000009308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009700
23058277 - 23067870
9594