About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23073939_23074622_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23073939 - 23074622
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTCCTTCATT
Flanking Amino Acid:
DKRDNLSTSAGNDTTTSLKV
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.4
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.5
0.6
0.8
68.4
38
Minor 5ss
33.5
-1.9
3.1
42.4
44.3
Minor BPS
66
0.59
1.8
79.08
43.9

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315