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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23074815_23075682_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23074815 - 23075682
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TTTTATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCTTTTTTATAT
Flanking Amino Acid:
ERNQTENCKQESQSLHAALE
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.8
82
33.9
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
53
0.17
1.7
69.02
42.2

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315