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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23075764_23076301_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23075764 - 23076301
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
GGTAACATAATT
Flanking Amino Acid:
CNSLHHVLRMKELKQITSFP
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
81.1
0.7
0.7
80.8
24.4
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
49.5
0.04
1.8
68.98
41.1

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315