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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23076407_23076644_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23076407 - 23076644
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAC
U12 Branch Point Sequence:
TGCTTCCTACCT
Flanking Amino Acid:
KSIEILQNDVIFTCCYTHVE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
58.9
0.22
1.3
58.4
40
Major PPT
82.9
0.74
0.8
77.3
31.5
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
51.1
0.11
2
72.75
44.1

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315