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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23076756_23079552_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23076756 - 23079552
Intron Length:
2797

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
AAGGCTGAGATT
Flanking Amino Acid:
LPVTVEKLQKTVANIGSTLT
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
87.6
0.85
0.7
80.2
31.8
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
37.8
-0.8
2.1
48.5
39.6

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315