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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23079652_23081468_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23079652 - 23081468
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAAAT
U12 Branch Point Sequence:
TGTTGGCTGATT
Flanking Amino Acid:
WINITEINKQISLLTSTVNH
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
62.1
0.3
1.2
67.3
37.8
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
42.6
-0.5
2.6
68.31
43

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315