About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23081615_23084939_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23081615 - 23084939
Intron Length:
3325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTTGATTAAAT
Flanking Amino Acid:
LDVIKEKFRTMESNQKTSFQ
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
84.1
0.77
0.8
84.8
30
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
55.6
0.25
2.1
79.63
41.7

Associated Gene:

Gene:
EFCAB14
Ensembl Gene ID:
ENSAPLG00000026113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021064
23070326 - 23085640
15315