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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23087570_23090879_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23087570 - 23090879
Intron Length:
3310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCACAACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCACAACT
Flanking Amino Acid:
THWLLGHVHEFLKEEEALDK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.2
0.39
0.9
59.2
35.7
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
71.7
0.76
1.8
93.85
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009978
23087390 - 23096833
9444