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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23092155_23093001_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23092155 - 23093001
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGATG
5'SS Class:
major
3'SS Sequence:
CTTTACCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTCCTTTACCC
Flanking Amino Acid:
LMAESTNVMLDKWEKLATDG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
66.1
45
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.3
0.48
0.8
62.9
34.1
Minor 5ss
34.6
-1.7
3.5
44.5
44.7
Minor BPS
62.9
0.39
1.6
71.26
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009978
23087390 - 23096833
9444