About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23093586_23094279_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23093586 - 23094279
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CCCTGCTGAACC
Flanking Amino Acid:
KVCQLAHDHTDKVIHERKES
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68
42.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
76.9
0.61
0.9
76
32.5
Minor 5ss
46.6
-0.3
2.8
66.1
45
Minor BPS
49.6
-0
2
58.45
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009978
23087390 - 23096833
9444