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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23094972_23095287_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23094972 - 23095287
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CAGCTCTTATTT
Flanking Amino Acid:
GILGDRETLQWEDLGKMTYS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.1
45
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.2
0.66
0.8
72.8
32
Minor 5ss
34.5
-1.8
3.4
44.4
44.4
Minor BPS
49.7
0.06
1.6
61.7
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009978
23087390 - 23096833
9444