Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23096169_23096335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23096169 - 23096335

Intron Length:

167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTAC

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTATCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTTAT

U12 Branch Point Sequence:

GCTGCTTTATCC

Flanking Amino Acid:

HAFLPFAAGIRNCIGQQFAM

Intron Amino Acid Position:

452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

72.4

33.3

Major BPS

66.1

0.4

1.3

59.6

46.8

Major PPT

77.4

0.62

0.9

69.6

40.4

Minor 5ss

36.4

-1.5

3.4

49.2

47.3

Minor BPS

54.4

0.12

1.7

62.32

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009978

23087390 - 23096833

9444