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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23147885_23148844_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23147885 - 23148844
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TAACGCTAAACT
Flanking Amino Acid:
KKNTHKVENASILACINPEA
Intron Amino Acid Position:
1027

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
50.4
0.09
2.1
71.7
44.6

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279