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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23149096_23149559_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23149096 - 23149559
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTCAT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAA
U12 Branch Point Sequence:
CCTGCCCCATTT
Flanking Amino Acid:
QDQKLYQHLLGQVNHLLKSS
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
85
0.79
0.7
78.4
35.5
Minor 5ss
36.1
-1.6
3
47.2
42.5
Minor BPS
41.2
-0.5
2.1
56.17
46.6

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279