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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23149753_23151704_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23149753 - 23151704
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
ATCTGCTTATGT
Flanking Amino Acid:
VEEGANQNTLQNENVSQALI
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
83.7
0.76
0.9
81.2
36.5
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
48
-0
2.3
69.66
47.3

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279