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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23151931_23152733_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23151931 - 23152733
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTTCCTAAATG
Flanking Amino Acid:
RKSVSIAVSTGASLFWDAPS
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.4
0.77
0.7
77.4
31.4
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
66.8
0.39
1.8
70.75
43.1

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279