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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23156214_23157037_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23156214 - 23157037
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTCTGTTTGACT
Flanking Amino Acid:
SRICKKLPIRSPPHGCSPSK
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
66.2
0.37
1.1
66
45.1
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
65
0.55
1.8
82.51
39.6

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279