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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23158415_23160075_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23158415 - 23160075
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAAGA
Flanking Amino Acid:
RYLFSSSIQERVFSESGRFL
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
81.1
36.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
24.2
-3
3.7
34.7
41.7
Minor BPS
68.5
0.58
1.5
76.76
34.5

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279