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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23160163_23160320_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23160163 - 23160320
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTCTTACTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTCTTCTTACTT
Flanking Amino Acid:
PKAYALPLVGVWLSGVTHIS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.4
36.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
82.5
0.73
0.7
78
29.5
Minor 5ss
38.3
-1.3
3.3
49.9
46.4
Minor BPS
68.5
0.66
1.6
82.74
39.5

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279