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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23160405_23161219_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23160405 - 23161219
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAAACACAACT
Flanking Amino Acid:
IAQVQGTYKCGYLTMDQTRK
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
44.1
-0.3
1.9
60.71
41.4

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279