About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23161468_23162442_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
23161468 - 23162442

Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGGCAGC

5'SS Class:
major

3'SS Sequence:
CCTTTACTTGTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGTAT

U12 Branch Point Sequence:
TTTCCTTTACTT

Flanking Amino Acid:
SAEDISLAFKDLQHSLCSKD

Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.1
0.69
1.1
67.1
44.6

Major BPS
71.5
0.53
1.4
71.7
44.6

Major PPT
79.1
0.65
0.8
73.8
30

Minor 5ss
38.3
-1.3
3.1
51.6
45.2

Minor BPS
68.3
0.65
1.6
84.98
35.9

Associated Gene:

Gene:
STIL

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

23146345 - 23164623
18279