About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23162850_23164519_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23162850 - 23164519
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGTGCTTTAAAC
Flanking Amino Acid:
EAVGSHIAYYRNPKLFLMEK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.8
42.4
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
79.9
0.67
0.8
78
30.8
Minor 5ss
30.6
-2.2
3.3
40.1
45.6
Minor BPS
65.7
0.47
1.5
72.23
38.8

Associated Gene:

Gene:
STIL
Ensembl Gene ID:
ENSAPLG00000010138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010565
23146345 - 23164623
18279