Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23174325_23175795_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23174325 - 23175795

Intron Length:

1471

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGAAG

5'SS Class:

major

3'SS Sequence:

ATGTCTTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATCCTTTTGATG

Flanking Amino Acid:

FVLFFDCDNEICIGRCLERG

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

71.5

39.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

78.6

0.64

0.8

73.9

36.1

Minor 5ss

31.7

-2.1

3.1

39.3

46.2

Minor BPS

50.8

-0.1

1.3

52.79

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047624

23172606 - 23178207

5602

ENSAPLT00000028273

23164644 - 23178207

13564