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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23195651_23196207_F

Intron Information:

Intron Rank:
146093
Intron Class:
major
Intron Phase:
Intron Coordinates:
23195651 - 23196207
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
55.7
0.16
2.1
76.26
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028709
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034994
23187008 - 23197207
10200