About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23533438_23560176_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23533438 - 23560176
Intron Length:
26739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
TTGCTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
DKSFFFAFGAATLFLLQQTS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.3
0.79
0.8
80.2
32
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
TRABD2B
Ensembl Gene ID:
ENSAPLG00000007124
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007384
23533029 - 23728576
195548