About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2357013_2387441_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2357013 - 2387441
Intron Length:
30429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCATTCTGACAG
Flanking Amino Acid:
AVTKTFSLDKDIVTNVSPRI
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78.5
0.64
0.9
72.2
37.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
42.7
-0.6
1.8
41.48
43

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022824
2220811 - 2563107
342297
ENSAPLT00000012599
2220811 - 2563107
342297
ENSAPLT00000046083
2220811 - 2558897
338087