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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23728005_23728468_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23728005 - 23728468
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCCGA
5'SS Class:
major
3'SS Sequence:
TTCCTCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCGGCACTGACC
Flanking Amino Acid:
DTGQCDLPRSQGELNSFLWT
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.3
44.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
75.3
0.57
0.9
69.3
36.9
Minor 5ss
32.3
-2
3
39.3
46
Minor BPS
42.2
-0.6
2
47.07
42.7

Associated Gene:

Gene:
TRABD2B
Ensembl Gene ID:
ENSAPLG00000007124
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007384
23533029 - 23728576
195548