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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23864554_23864728_F

Intron Information:

Intron Rank:
132315
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23864554 - 23864728
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
AAG|GTGCTTGTT
5'SS Class:
major
3'SS Sequence:
TTATGTCCACTGG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTCCTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.3
36
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
39
-0.6
3.2
52.8
42.5
Minor 5ss
32.2
-2
3.5
49.3
46.9
Minor BPS
67.4
0.4
1.7
71.23
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021088
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031475
23864524 - 23865667
1144