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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2387658_2395326_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2387658 - 2395326
Intron Length:
7669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
ASWYMHRYIQSLYGAEVSAT
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046083
2220811 - 2558897
338087
ENSAPLT00000022824
2220811 - 2563107
342297
ENSAPLT00000012599
2220811 - 2563107
342297