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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23895291_23895891_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23895291 - 23895891
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCTGTGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGAAAA
U12 Branch Point Sequence:
AATGGAGGAAAA
Flanking Amino Acid:
FVFVLAVGIWSSIRASRGTI
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
43.7
-0.4
1.1
42.8
36.4
Major PPT
77.7
0.62
0.9
68.3
42.2
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
32.3
-1.3
2.3
42.37
38.2

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449