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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23895964_23898338_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23895964 - 23898338
Intron Length:
2375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CTGTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
TGTGCCTGTGCT
Flanking Amino Acid:
LAGRSMTWWPIGASLMSSNV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
76
0.59
1
72.6
42.4
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
38.6
-0.7
3.6
69.66
46.7

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449