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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23900471_23902773_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23900471 - 23902773
Intron Length:
2303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATGTATC
5'SS Class:
weak_major
3'SS Sequence:
ATTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTATTATAATT
Flanking Amino Acid:
LILYIFTKISTDIFSGALFI
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
69.2
41.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
86
0.81
0.8
77.6
40.7
Minor 5ss
48.2
-0.2
2.4
67.5
36.5
Minor BPS
61.4
0.44
1.6
80.96
34.8

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449