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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23902880_23903098_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23902880 - 23903098
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCCTAACA
Flanking Amino Acid:
LAVTAVYTIAGGLTAVIYTD
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.5
32.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.3
0.79
0.8
81.8
28.7
Minor 5ss
35.5
-1.6
2.8
42
39.2
Minor BPS
75.9
0.81
1.6
87.87
29.2

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449