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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23903180_23903939_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23903180 - 23903939
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATAACATTAAAT
Flanking Amino Acid:
ILGALVLMFIGFEKVGWYEG
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
91.1
0.93
0.7
89.2
26.8
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
58.3
0.34
1.7
75.46
40

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449