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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23904146_23904951_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23904146 - 23904951
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGACCAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACCA
Flanking Amino Acid:
LALWCWCTDQVIVQRSLSAK
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
67.5
0.39
1
59.5
40.4
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
51.8
0.05
1.8
63.1
43.6

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449