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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23905088_23905999_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23905088 - 23905999
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCCTGTATC
Flanking Amino Acid:
PGMISRALYPDEVGCVDPDI
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.3
0.59
0.9
69.2
36.8
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
65.5
0.47
1.8
79.56
35.6

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449