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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23906440_23907621_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23906440 - 23907621
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCTTACA
5'SS Class:
major
3'SS Sequence:
ACTCATCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACTCATCT
Flanking Amino Acid:
ASEQELMIVGRVFILILVVI
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.4
64.6
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.8
0.49
0.9
62.5
38.8
Minor 5ss
30.4
-2.2
2.6
36
40
Minor BPS
54.4
0.22
2
78.68
42.9

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449