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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23913877_23915227_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23913877 - 23915227
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
TTTTGTCTATTT
Flanking Amino Acid:
SADLGNKEEEAPRPPWWKML
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
81.3
0.7
0.8
76.8
31.6
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
47.8
-0
2.2
75.99
41.5

Associated Gene:

Gene:
SLC5A9
Ensembl Gene ID:
ENSAPLG00000007144
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007444
23894988 - 23915436
20449