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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23928645_23932324_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23928645 - 23932324
Intron Length:
3680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATATCT
Flanking Amino Acid:
AHLSMSELQSSSPVQRNTTV
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
75.1
40.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.1
0.59
1.1
72.2
42.7
Minor 5ss
40.1
-1.1
3.2
57.4
46.9
Minor BPS
54.7
0.23
1.8
77.51
38.9

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036683
23928210 - 23965138
36929
ENSAPLT00000008129
23928210 - 23965138
36929