Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23932414_23935082_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23932414 - 23935082

Intron Length:

2669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTTTG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

GAGAATTTGATT

Flanking Amino Acid:

THSARQRLVFNESNSSKGDL

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

73.5

37.9

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

46.4

-0.4

2.8

64.2

41.3

Minor BPS

47.5

-0.1

1.5

57.96

39.1

Associated Gene:

Gene:

SPATA6

Ensembl Gene ID:

ENSAPLG00000007793

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036683

23928210 - 23965138

36929

ENSAPLT00000008129

23928210 - 23965138

36929