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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23944487_23945419_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23944487 - 23945419
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTGTTTTAACA
Flanking Amino Acid:
LGSYKPKRAKAKSTHGKDCD
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
100
1.24
0.5
100
0
Major PPT
77.7
0.62
1
73.3
40.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036683
23928210 - 23965138
36929
ENSAPLT00000008129
23928210 - 23965138
36929