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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23948386_23950555_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23948386 - 23950555
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCATA
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TGATGTCAAACC
Flanking Amino Acid:
LLSSGRSHIQDDLNWVHHST
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
79.2
36.3
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
87.4
0.84
0.6
86.4
20.3
Minor 5ss
39.3
-1.2
2.8
49.4
46.5
Minor BPS
43
-0.5
2.2
56.36
42.1

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024863
23947218 - 23965138
17921
ENSAPLT00000008129
23928210 - 23965138
36929
ENSAPLT00000036683
23928210 - 23965138
36929